京都大学 物質-細胞統合システム拠点

Sugiyama Laboratory, Kyoto University

Publications :2018

2018 (Highlighted Articles Representing International Collaboration Project)


403. Chemical Control System of Epigenetics
Vaijayanthi, T.; Pandian G. N.; Sugiyama, H.

Chemical Records
2018, 18, 1833-1853.


402. Approach to the Investigation of Nucleosome Structure by Using the Highly Emissive Nucleobase thdG-tC FRET Pair
Han, J. H.; Park, S.; Hashiya, F.; Sugiyama, H.

Chem. Eur. J.
2018, 24, 17091-17095.


401. Sequence Preference and Structural Heterogeneity of BZ junctions
Kim, D.; Hur, J.; Han, J. H.; Ha, S. C.; Shin, D.; Lee, S.; Park, S.; Sugiyama, H.; Kim, K. K.

Nucleic Acids Research
2018, 46, 10504-10513.


400. Direct Observation of Dynamic Movement of DNA Molecules in DNA Origami Imaged using High-speed AFM
Endo, M.; Sugiyama, H.

Springer Protocols. Methods in Molecular Biology 1814, Nanoscale Imaging, Lyubchenko Y. L. ed.
, Chapter 13 213-224.


399. Direct Observation of H3-H4 Octasome by High-Speed AFM
Zou, T.; Hashiya, F.; Wei, Y.; Yu, Z.; Ganesh, N. P.; Sugiyama, H.

Chem. Eur. J.
2018, 24, 15998-16002.


398. Decreased Water Activity in Nanoconfinement Contributes to the Folding of G-quadruplex and i-Motif Structures
Jonchhe, S.; Pander, S.; Emura, T.; Hidaka, K.; Hossain, M. A.; Shrestha, P.; Sugiyama, H. Endo, M.; Mao, H.

PNAS
2018, 115, 9539-9544.


397. Colloidal Stability of Lipid/Protein-Coated Nanomaterials in Salt and Sucrose Solutions
Nobeyama, T.; Mori, M.: Shigyou, K.; Takata, K.; Pandian, G. N.; Sugiyama, H.; Murakami T.

ChemistrySelect
2018, 3, 8325-8331.


396. DNA Origami Nanomachines
Endo, M.; Sugiyama, H.

Molecules
2018, 23, E1766.


395. Orthogonal γPNA Dimerization Domains Empower DNA Binders with Cooperativity and Versatility Mimicking that of Transcription Factor Pairs
Yu, Z.; Hsieh, W-C.; Asamitsu, S.; Hashiya, K.; Bando, T.; Ly, H. D.; Sugiyama, H.

Chem. Eur. J.
2018, 24, 14183-14188.


394. Construction of Integrated Gene Logic-chip
Masubuchi, T.; Endo, M.; Iizuka, R.; Iguchi, A.; Yoron, D. H.; Sekiguchi, T.; Qi, H.; Iinuma, R.; Miyazono, Y.; Shoji, S.; Funatsu, T.; Sugiyama, H.; Harada, Y.; Ueda, T.; Tadakuma, H.

Nature Nanotechnology
2018, 13, 933-940.


393. TAMRA-Polypyrrole for A/T Sequence Visualization on DNA Molecules
Lee, S.; Kawamoto, Y.; Thangavel, V.; Park, J.; Bae, J.; Kim-Ha, J.; Sugiyama, H.; Jo, K.

Nucleic Acids Research
2018, 46, e108.


392. Biomimetic Artificial Epigenetic Code for Targeted Acetylation of Histones
Taniguchi, J.; Feng, Y.; Pandian, G.; Hashiya, F.; Hidaka, T.; Hashiya, K.; Park, S.; Bando, T.; Ito, S.; Sugiyama, H.

J. Am. Chem. Soc.
2018, 140, 7108-7115.


391. Environment-dependent Self-assembly of DNA Origami Lattices on Phase-separated Lipid Membranes
Sato, Y.; Endo, M.; Morita, M.; Takinoue, M.; Sugiyama, H.; Murata, S.; Nomura, S.; Suzuki, Y.

Adv. Mater. Interfaces
2018, 1800437.


390. RUNX1 Positively Regulates the ErbB2/HER2 Signaling Pathway through Modulating SOS1 Expression in Gastric Cancer Cells
Mitsuda, Y.; Morita, K.; Kashiwazaki, G.; Taniguchi, J.; Bando, T.; Obara, M.; Hirata, M.; Kataoka, R. T.; Muto, M.; Kaneda, Y.; Nakahata, T.; Liu, P. P.; Adachi, S.; Sugiyama, H.; Kamikubo, Y.

Scientific Reports
2018, 8, 6423.


389. Complexing DNA Origami Frameworks through Sequential Self-assembly Based on Directed Docking
Suzuki, Y.; Sugiyama, H.; Endo, M.

Angew. Chem. Int. Ed.
2018, 130, 7179-7183.


388. A Synthetic DNA-binding Inhibitor of HES1 Alters the Notch Signaling Pathway and Induces Neuronal Differentiation
Wei, Y.; Pandian, G.; Yu, Z.; Zou, T.; Li, Y.; Darokar, J.; Hashiya, K.; Bando, T.; Sugiyama, H.

ACS Omega
2018, 3, 3608-3616.


387. Pip-HoGu: an Artificial Assembly with Cooperative DNA Recognition Capable of Mimicking Transcription Factor Pairs
Yu, Z.; Guo, C.; Wei, Y.; Hashiya, K.; Bando, T.; Sugiyama, H.

J. Am. Chem. Soc.
2018, 140, 2426-2429.


386. Triggering Nucleic Acid Nanostructure Assembly by Conditional Kissing Interactions
Azéma, L.; Bonnet-Salomon, S.; Endo, M.; Takeuchi, Y.; Durand, G.; Emura, T.; Hidaka, K.; Dausse, E.; Sugiyama, H.; Toulmé, JJ.

Nucleic Acids Res.
2018, 46, 1052-1058.


385. Simultaneous Binding of Hybrid Molecules Constructed with Dual DNA-binding Components to a G-quadruplex and its Proximal Duplex
Asamitsu, S.; Obata, S.; Phan, A. T.; Hashiya, K.; Bando, T.; Sugiyama, H.

Chem. Eur. J.
2018, 24, 4428-4435
.

384. Sequence-specific DNA Binding Pyrrole–Imidazole Polyamides and Their Applications
Kawamoto, Y.; Bando, T.; Sugiyama, H.

Bioorg. Med. Chem.
2018, 26, 1393-1411.


383. RUNX Transcription Factors Potentially Control E-Selectin Expressions in the Bone Marrow Vascular Niche of Mice
Morita, K.; Tokushige, C.; Maeda, S.; Kiyose, H.; Noura, M.; Iwai, A.; Yamada, M.; Kashiwazaki, G.; Taniguchi, J.; Bando, T.; Hirata, M.; Kataoka, T. R.; Nakahata, T.; Adachi, S.; Sugiyama, H.; Kamikubo, Y.

Blood Advances
2018, 5, 509-515.


382. Targeting G-quadruplex DNA as Cognitive Function Therapy for ATR-X Syndrome
Shioda, N.; Yabuki, Y.; Yamaguchi, K.; Onozato, M.; Li, Y.; Kurosawa, K.; Tanabe, H.; Okamoto, N.; Era, T.; Sugiyama, H.; Wada, T.; Fukunaga, K.
Nature Medicine
2018, 24, 802-813.


381. DNA Origami Scaffolds as Templates for Functional Tetrameric Kir3 K+ Channels
Kurokawa, T.; Kiyonaka, S.; Nakata, E.; Endo, M.; Koyama, S.; Mori, E.; Tran, N. H.; Dinh, H.; Suzuki, Y.; Hidaka, K.; Kawata, M.; Sato, C.; Sugiyama, H.; Morii, T.; Mori, Y.
Angew. Chem.
2018, 57, 2586-2591.


380. Investigating Nucleosome Accessibility for MNase, FeII  Peplomycin, and Duocarmycin B2 by Using Capillary Electrophoresis
Zou, T.; Kizaki, S.; Sugiyama, H.
ChemBioChem.
2018, 19, 664-668.


379. G-Quadruplex Induction by the Hairpin Pyrrole–Imidazole Polyamide Dimer
Obata, S.; Asamitsu, S.; Hashiya, K.; Bando, T.; Sugiyama, H.

Biochem.
2018, 57, 498-502.


378. UVA Irradiation of BrU-Substituted DNA in The Presence of Hoechst 33258
Saha, A.; Kizaki, S.; Han, J. H.; Yu, Z.; Sugiyama, H.
Bioorg. Med. Chem.
2018, 26, 37-40.


377. Evaluation of Alkylating Pyrrole-Imidazole Polyamide Conjugates by a Novel Method for High-Throughput Sequencer
Kashiwaszaki, G.; Maeda, R.; Kawase, T.; Hashiya, K.; Bando, T.; Sugiyama, H.
Bioorg. Med. Chem.
2018, 26, 1-7