京都大学 物質－細胞統合システム拠点
Publications :2023
2023 (Highlighted Articles Representing International Collaboration Project)
538. Nucleic Acid-based Small Molecules as Targeted Transcription Therapeutics for Immunoregulation
Bai, R.; Ziadlou, R.; Vaijayanthi, T.; Karthikeyan, S.; Chinnathambi, S.; Parthasarathy, A.; Cai, L.; Bruggen, M-C., Sugiyama, H.; Pandian, G. N.
Allergy, in press
537. Modulation of Excimer Formation and Photoexcitation Behaviour through DNA-Surfactant-dye Supramolecular Assembly
Bai, D.; Zhao, W.; Feng, H.; Sugiyama, H.
Macromol. Mater. Eng., 2023, 2300329
536. Novel Auger-Electron emitting 191Pt-labeled Pyrrole–Imidazole Polyamide Targeting MYCN Increases Cytotoxicity and Cytosolic dsDNA Granules in MYCN-Amplified Neuroblastoma
Obata, H.; Atsushi B. Tsuji, B. A.; Sudo, H.; Sugyo A.; Hashiya K.; Ikeda, H.; Minegishi, K.; Nagatsu, K.; Ogawa, M.; Bando, T.; Sugiyama, H.; Zhang, M.-R.
Pharmaceuticals (Basel), 2023, 16, 1526
535. Nucleic Acid Assembled Semiconducting Materials: Rational Design, Structure-property Modulation and Performance Evaluations
Bai, D.; Zhao, W.; Feng, H.; Sugiyama, H.
APL Mater., 2023, 11, 100601
534. A Cyclic Pyrrole-imidazole Polyamide Reduces Pathogenic RNA in CAG/CTG Triplet Repeat Neurological Disease Models
Ikenoshita, S.; Matsuo, K.; Yabuki, Y.; Kawakubo, K.; Asamitsu, S.; Hori, K.; Usuki, S.; Hirose, Y.; Bando, T.; Araki, K.; Ueda, M.; Sugiyama, H.; Shioda, N.
J. Clin. Invest, 2023, 133, e164792
533. Targeting Cis-regulatory Elements of FOXO Family is a Novel Therapeutic Strategy for Induction of Leukemia Cell Differentiation
Hirao, A.; Kurayoshi, K.; Takase, Y.; Ueno, M.; Ohta, K.; Fuse, K.; Ikeda, S.; Watanabe, T.; Nishida, Y.; Horike, S.; Hosomichi, K.; Tadokoro, Y.; Kobayashi, M.; Kasahara, A.; Jing, Y.; Shoulkamy, M.; Meguro-Horike, M.; Kojima, K.; Sugiyama, H.; Hiroki, N.; Tajima, A.; Ishikawa, Y.; Kiyoi, H.; Hirao, A.
Cell Death & Disease, 2023, 14, 642
532. DNA methylation modification patterns identify prognosis responses to immunotherapy and targeted therapy
Bai, D.; Yang, Z.; Cheng, Y.; Pandian, G. N.; Sugiyama, H.
Frontiers in Bioscience-Landmark, 2023, 28, 224
531. Structural Expansion of Catalytic RNA Nanostructures Through Oligomerization of a Cyclic Trimer of Engineered Ribozymes
Siddika, M. A.; Oi, H.; Hidaka, K.; Sugiyama, H.; Endo, M.; Matsumura, S.; Ikawa, Y.
Molecules, 2023, 28, 6465
530. Anticancer Activities of DNA-Alkylating Pyrrole−Imidazole Polyamide Analogs Targeting RUNX Transcription Factors against p53 Mutated Pancreatic Cancer PANC-1 Cells
Hirose, Y.; Sato, S.; Hashiya, K.; Bando, T.; Sugiyama, H.
J. Med. Chem., 2023, 66, 12059-12068
529. Two-Dimensional DNA Origami Lattices Assembled on Lipid Bilayer Membranes.
Suzuki, Y.; Sugiyama, H.; Endo, M.
in: DNA and RNA Origami. Methods in Molecular Biology, vol 2639. 2023 Humana, New York, NY, https://doi.org/10.1007/978-1-0716-3028-0_5.
528. Isothermal Self-assembly of Multicomponent and Evolutive DNA Nanostructures
Rossi-Gendron, C.; Fakih, F. E.; Bourdon, L.; Nakazawa, K.; Finkel, J.; Triomphe, N.; Chocron, L.; Endo, M.; Sugiyama, H.; Bellot, G.; Morel, M.; Rudiuk, S.; Baigl, D.
Nature Nanotechnology, 2023, 18, 1311-1318.
527. AT-specific DNA Visualization Revisits the Directionality of Bacteriophage λ DNA Ejectionn
Bong S.; Park C. B.; Cho S.-G.; Bae, J.; Hapsari, N. D.; Jin, X.; Heo, S.; Lee, J.; Hashiya, K.; Bando, T.; Sugiyama, H.; Jung, K.-H.; Sung, B. J.; Jo, K.
Nucleic Acids Research, 2023, 51, 5634-5646.
526. Histidine-DNA Nanoarchitecture as Laccase Mimetic DNAzymes
Yum, J.; Kumagai, T.; Hori, D.; Suigyama, H.; Park, S.
Nanoscale, 2023, https://doi.org/10.1039/D3NR01625K.
525. Highly Fluorescent Isomorphic Nucleobase Analogs Based on the Thieno[3,4-d]-pyrimidine
Park, S.; Sugiyama, H.
Photomed. Photobiol., 2023, 43-44, 29-43.
524. Identification of Genes Responsible for the Social Skill in the Earthworm, Eudrilus Eugeniae
Lathakumari, S.; Seenipandian, S.; Balakrishnan, S.; Raj, A. P. M. S.; Sugiyama, H.; Pandian, G. N.; Sivasubramaniam, S.
Gene Reports, 2023, 31, 101774 (1-19).
523. Artificial Genetic Switches and DNA Origami: Current Landscape and Prospects as Designer Therapeutics and Visualization Tools
Pandian, G. N.; Mishra, S.; Sugiyama, H.
in Handbook of Chemical Biology of Nucleic Acids, Eriks Rozners, Naoki Sugimoto, Ed. Springer Nature, in press
522. Pyrrole-Imidazole Polyamides- A Frontrunner in Nucleic Acid-Based Small Molecule Drugs
Vaijayanthi, T.; Pandian, G. N.; Sugiyama, H.
Advanced Therapeutics, 2023, 2300022 (1-8).
521. Substitution to Hydrophobic Linker and Formation of Host–guest Complex Enhanced the Effect of Synthetic Transcription Factor
Hatanaka, J.; Hashiya, K.; Bando, T.; Sugiyama, H.
Bioorg. Med. Chem., 2023, 81, 117208.
520. Nanoparticle-Based Artificial Mitochondrial DNA Transcription Regulator: MitoScript
Yang, L.; Rathnam, C.; Hidaka, T.; Hou, Y.; Conklin, B.; Pandian, G. N.; Sugiyama, H.; Lee, K. B.
Nano Letter, 2023, 23, 2046-2055.
519. Thiophene-extended Fluorescent Nucleosides as Molecular Rotor-Type Fluorogenic Sensors for Biomolecular Interactions
Kumagai, T.; Kinoshita, B.; Hirashima, S.; Sugiyama, H.; Park, S.
ACS Sensors, 2023, 8, 923-932.
518. Evaluation by Experimentation and Simulation of a FRET Pair Comprising Fluorescent Nucleobase Analogs in Nucleosomes
Hirashima, S.; Park, S.; Sugiyama, H.
Chem. Eur. J., 2023, e20220396 (1-8).
517. Photocontrolled DNA Nanotubes as Stiffness Tunable Matrices for Controlling Cellular Behavior
Sethi, S.; Emura, T.; Hidaka, K.; Sugiyama, H.; Endo, M.
Nanoscale, 2023, 15, 2904-2910.
516. RNA G-quadruplex Organizes Stress Granule Assembly through DNAPTP6 in Neurons
Asamitsu, S.; Yabuki, Y.; Matsuo, K.; Kawasaki, M.; Hirose, Y.; Kashiwazaki, G.; Chandran, A.; Bando, T.; Wang, D. O.; Sugiyama, H.; Shioda, N.
Science Advances, 2023, 9, eade2035 (1-15).
515. Sequece-Specific Chromosomal DNA Binders: An Unfulfilled Promise?
Yu, Z.; Pandian, G. N.; Sugiyama, H.
Nucleic Acids in Medicinal Chemistry and Chemical Biology: Drug Development and Clinical Applications, 2023, Chapter 5, 132-156.
514. Mitochondria and G-quadruplex Evolution: An Intertwined Relationship
Sahayasheela, V. J.; Yu, Z.; Hidaka, T.; Pandian, G. N.; Sugiyama, H.
Trends in Genetics., 2023, 39, 15–30.
