2023
Time-resolved detection of light-induced conformational changes of heliorhodopsin
Yusuke Nakasone, Yuma Kawasaki, Masae Konno, Keiichi Inoue, Masahide Terazima.
Phys. Chem. Chem. Phys., 25(18), 12833-12840 (2023)
Effects of N- and C-terminal regions on oligomeric formation of blue light
sensor protein SyPixD
Shunrou Tokonami, Yusuke Nakasone, Masahide Terazima.
Protein Sci., 32(6), e4658 (2023)
Conformational change in an engineered biliverdin-binding cyanobacteriochrome
during the photoconversion process
Yuka Takeda, Itsuki Ohtsu, Takahisa Suzuki,Yusuke Nakasone, Keiji Fushimi,
Masahiko Ikeuchi, Masahide Terazima, Hideo Dohra, Rei Narikawa.
Archives of Biochem. Biophys., 745, 109715 (2023)
Time-resolved study on signaling pathway of photoactivated adenylate cyclase
and its nonlinear optical response
Yusuke Nakasone, Hirito Murakami, Shunrou Tokonami, Takashi Oda, Masahide
Terazima.
J. Biol. Chem., 299(11), 105285(2023)
Time-resolved diffusion method to detect and reveal protein reactions leading
to their functions
Masahide Terazima
Bull. Chem. Soc. Jpn, 96, 852-871 (2023)
2022
Selective Photoinduced Dimerization and Slow Recovery of a BLUF Domain
of EB1
Kosei Shibata, Yusuke Nakasone, Masahide Terazima
J. Phys. Chem. B, 126, 5, pp.1024–1033 (2022)
Slow Conformational Changes of Blue Light Sensor BLUF Proteins in Milliseconds
Shunrou Tokonami, Morihiko Onose, Yusuke Nakasone, Masahide Terazima
J. Am. Chem. Soc., 144(9), pp.4080-4090.(2022)
Salt effect on the selective photoinduced dimerization of a BLUF domain
of EB1
Kosei Shibata, Yusuke Nakasone, Masahide Terazima
J. Mol. Liq., 361, 119696(1-10) (2022)
Usefulness of higher-order system-size correction for macromolecule diffusion
coefficients: A molecular dynamics study
Tomoya Iwashita, Masaaki Nagao, Akira Yoshimori, Masahide Terazima, Ryo
Akiyama
Chem. Phys. Lett., 807, 140096(1-7) (2022)
Revealing protein reactions using transient grating method: Photo-induced
heating, volume change, and diffusion change
Masahide Terazima
J. Appl. Phys., 131, 140902(1-13) (2022)
Time-resolved diffusion reveals photoreactions of BLUF proteins with similar
functional domains
Yusuke Nakasone, Masahide Terazima
Photochem. Photobiol. Sci., 21, 493-507 (2022)
Applications of Time-Resolved Thermodynamics for Studies on Protein Reactions
Masahide Terazima
J, 5, 186-197 (2022)
2021
Photoreaction of photoactivated adenylate cyclase from cyanobacterium Microcoleus
chthonoplastes
Misato Ikoma, Yusuke Nakasone, Masahide Terazima
Journal of Photochemistry and Photobiology B: Biology,221,pp112252 (2021)
A unique photochromic UV-A sensor protein, Rc-PYP, interacting with the
PYP-binding protein
Suhyang Kim, Yusuke Nakasone, Akira Takakado, Yoichi Yamazaki, Hironari
Kamikubo, Masahide Terazima
Phys.Chem.Chem.Phys., 23, pp. 17813-17825 (2021)
Effect of Hydrated Ionic Liquid on Photocycle and Dynamics of Photoactive
Yellow Protein
Utana Umezaki, Miu Hatakenaka, Kana Onodera, Hiroto Mizutani, Suhyang Kim,
Yusuke Nakasone, Masahide Terazima, Yoshifumi Kimura
Molecules, 26(15), pp4554 (2021)
Spectrally silent protein reaction dynamics revealed by time-resolved thermodynamics
and diffusion techniques
Masahide Terazima
Acc.Chem.Res., 54, pp2238-2248 (2021)
Enzymatic activity of the blue light-regulated phosphodiesterase Blrp1
from Klebsiella pneumoniae shows a nonlinear dependence on light intensity
Kosei Shibata, Yusuke Nakasone, Masahide Terazima
FEBS Letters, (2021)
Time-resolved detection of SDS-induced conformational changes in α-synuclein
by a micro-stopped-flow system
Shunki Takaramoto, Yusuke Nakasone, Kei Sadakane, Shinsaku Maruta, Masahide
Terazima
RSC Adv., 11, pp1086-1087 (2021)
A Time-Resolved Diffusion Technique for Detection of the Conformational
Changes and Molecular Assembly/Disassembly Processes of Biomolecules
Yusuke Nakasone, Masahide Terazima
Front. Genet., 12, 1-14 (2021)
Time-resolved detection of association/dissociation reactions and conformation
changes in photosensor proteins for application in optogenetics
Masahide Terazima
Biophys. Rev., 13, 1053-1059 (2021)
2020
Photoreaction Dynamics of a Full-Length Protein YtvA and Intermolecular
Interaction with RsbRA
Seokwoo Choi, Yusuke Nakasone, Klaas J. Hellingwerf, Masahide Terazima
Biochemistry , 59, pp. 4703–4710 (2020)
Wavelength-Dependent Photoreaction of PYP from Rhodobacter capsulatus
Suhyang Kim, Yusuke Nakasone, Akira Takakado, Yoichi Yamazaki, Hironari
Kamikubo, Masahide Terazima
Biochemistry , 59, pp. 4810–4821 (2020)
Spiropyran labeling for sensitive probing of protein diffusion by the transient
grating method
S. Takaramoto, Y. Nakasone, K. Sadakane, S. Maruta, M. Terazima
Chem.Phys.Lett., 739, 136919(1-6) (2020).
過渡回折格子法が拓くバイオサイエンス
高門輝, 寺嶋正秀
応用物理, 89, pp30-34 (2020)
2019
Photoreaction Dynamics of Full-Length Phototropin fromChlamydomonas reinhardtii
Yusuke Nakasone, Masumi Ohshima, Koji Okajima, Satoru Tokutomi, MasahideTerazima
J. Phys. Chem. B, 123, pp. 10939-10950 (2019)
Time-resolved diffusion detection with micro-stopped flow system
Yusuke Nakasone, Shunki Takaramoto and Masahide Terazima
Anal. Chem., 91, 18, pp. 11987-11993 (2019)
Enhanced conformational fluctuations during protein reactions
Masahide Terazima, Chem.Lett., 48, pp802-810 (2019)
過渡回折格子分光法による，光受容体フォトトロピンの反応機構と多様性
中曽根祐介, 寺嶋正秀
生物物理, 59, pp144-146 (2019)
Dynamics of Conformational Changes in Full-Length Phytochrome from CyanobacteriumSynechocystissp. PCC6803 (Cph1) Monitored by Time-Resolved Translational Diffusion Detection
Kimitoshi Takeda, Masahide Terazima
Biochemistry, 58, pp. 2720-2729 (2019)
Time-Resolved Study of Interprotein Signaling Process of a Blue Light Sensor
PapB−PapA Complex
Yusuke Nakasone, Koutaro Kikukawa, Shinji Masuda and Masahide Terazima
J. Phys. Chem. B, 123, pp.3210–3218 (2019)
2018
Photoinduced Orientation Change of the Dimer Structure of the Pr-I State
of Cph1Δ2
Kimitoshi Takeda and Masahide Terazima
Biochemistry, 57, pp. 5058-5071 (2018)
Photoreaction of BlrP1: the role of a nonlinear photo-intensity sensor
Kosei Shibata, Yusuke Nakasone and Masahide Terazima
Phys. Chem. Chem. Phys., 20, pp.8133–8142 (2018)
DOI: 10.1039/C7CP08436F
Sequential DNA Binding and Dimerization Processes of the Photosensory Protein
EL222
Akira Takakado, Yusuke Nakasone, and Masahide Terazima
Biochemistry, 57, 10, pp.1603–1610 (2018)
DOI: 10.1021/acs.biochem.7b01206
Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas
reinhardtii
Yusuke Nakasone, Masumi Ohshima, Koji Okajima, Satoru Tokutomi, and Masahide
Terazima
J. Phys. Chem. B, 122, 6, pp.1801–1815 (2018)
DOI: 10.1021/acs.jpcb.7b10266
Novel physical chemistry approaches in biophysical researches with advanced
application of lasers: Detection and manipulation
Koichi Iwata, Masahide Terazima, Hiroshi Masuhara
Biochimica et Biophysica Acta(BBA) - General Subjects, 1862, 2, pp.335–357 (2018)
https://doi.org/10.1016/j.bbagen.2017.11.003
光熱変換現象の時間分解検出と化学反応解析への応用
寺嶋正秀, 分光研究, 67, pp.22-34 (2018)
2017
Photoinduced dimerization of a photosensory DNA-binding protein EL222 and
its LOV domain
Akira Takakado, Yusuke Nakasone and Masahide Terazima
Phys. Chem. Chem. Phys.,19, pp.24855–24865 (2017)
DOI: 10.1039/C7CP03686H
Comparative study of thylakoid membranes in terminal heterocysts and vegetative
cells from two cyanobacteria, Rivularia M-261 and Anabaena variabilis,
by fluorescence and absorption spectral microscopy
Shuho Nozue, Mitsunori Katayama, Masahide Terazima, Shigeichi Kumazaki
Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1858, 9, pp.742–749 (2017)
https://doi.org/10.1016/j.bbabio.2017.05.007
Light-Induced Conformational Changes of LOV2-Kinase and the Linker Region
in Arabidopsis Phototropin2
Akira Takakado, Yusuke Nakasone, Koji Okajima, Satoru Tokutomi, and Masahide
Terazima
The Journal of Physical Chemistry B, 121, 17, pp.4414–4421 (2017)
DOI: 10.1021/acs.jpcb.7b01552
Conformational and Intermolecular Interaction Dynamics of Photolyase/Cryptochrome
Proteins Monitored by the Time-Resolved Diffusion Technique
Masato Kondoh, Masahide Terazima
Photochemistry and Photobiology, 93, 1, pp.15–25 (2017)
DOI: 10.1111/php.12681
2016
Characterization of thylakoid membrane in a heterocystous cyanobacterium
and green alga with dual-detector fluorescence lifetime imaging microscopy
with a systematic change of incident laser power
Shuho Nozue, Akira Mukuno, Yumi Tsuda, Takashi Shiina, Masahide Terazima,
Shigeichi Kumazaki
Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1857, 1, pp.46–59 (2016)
https://doi.org/10.1016/j.bbabio.2015.10.003
Macromolecular crowding effect for photoreactions of LOV2 domains of Arabidopsis
thaliana phototropin 1
Tomoyuki Yoshitake, Tsuguyoshi Toyooka, Yusuke Nakasone, Kazunori Zikihara,
Masahide Terazima
Journal of Molecular Liquids, 217, pp.43–50 (2016)
https://doi.org/10.1016/j.molliq.2015.08.030
Photochemical Reactions of the LOV and LOV-Linker Domains of the Blue Light
Sensor Protein YtvA
Seokwoo Choi, Yusuke Nakasone, Klaas J. Hellingwerf, and Masahide Terazima
Biochemistry, 55, 22, pp.3107–3115 (2016)
DOI: 10.1021/acs.biochem.6b00263
Time-Resolved Detection of Light-Induced Dimerization of Monomeric Aureochrome-1
and Change in Affinity for DNA
Yuki Akiyama, Yusuke Nakasone, Yoichi Nakatani, Osamu Hisatomi, and Masahide
Terazima
J. Phys. Chem. B, 120, 30, pp.360–7370 (2016)
DOI: 10.1021/acs.jpcb.6b05760
Dynamics of Inter-DNA Chain Interaction of Photoresponsive DNA
Yusuke Nakasone, Hideaki Ooi, Yukiko Kamiya, Hiroyuki Asanuma, and Masahide
Terazima
J. Am. Chem. Soc., 138, 29, pp.9001–9004 (2016)
DOI: 10.1021/jacs.6b02525
Anomalous pressure effects on the photoreaction of a light-sensor protein
from Synechocystis, PixD (Slr1694), and the compressibility change of its
intermediates
Tsubasa Nakajima, Kunisato Kuroi, Yusuke Nakasone, Koji Okajima, Masahiko
Ikeuchi, Satoru Tokutomi, and Masahide Terazima
Phys. Chem. Chem. Phys., 18, pp.25915–25925 (2016)
DOI: 10.1039/C6CP05091C
Time-resolved fluctuation during the photochemical reaction of a photorecepor
protein : Phototropin1LOV2-Linker
Kunisato Kuroi, Francielle Sato, Yusuke Nakasone, Kazunori Zikihara, Satoru
Tokutomi, and Masahide Terazima
Phys.Chem.Chem.Phys., 18, pp.6228-6238 (2016)
Molecular Science of Fluctuations Toward Biological Functions
Masahide Terazima, Mikio Kataoka, Ryuichi Ueoka, and Yuko Okamoto
ISBN: 978-4-431-55838-5 (Print) 978-4-431-55840-8 (Online)
圧力印加過渡回折格子法による反応中のタンパク質圧縮率の時間分解計測
黒井邦巧、寺嶋正秀
熱測定, 43, pp.66-71 (2016)
分子基盤に基づく生体機能ネットワークとダイナミクス
寺嶋正秀
国際高等研究所アニュアルレポート2015 (2016)
青色光センサータンパク質フォトトロピンの光制御機構
中曽根祐介，寺嶋正秀, 物性科学センター誌, 29, 3-11 (2016)
2015
Pressure-Sensitive Reaction Yield of the TePixD Blue-Light Sensor Protein
Kunisato Kuroi, Koji Okajima, Masahiko Ikeuch, Satoru Tokutomi, Tadashi
Kamiyama, and Masahide Terazima
J. Phys. Chem. B, 119, 7, pp.2897–2907 (2015)
DOI: 10.1021/jp511946u
Photo-induced inter-protein interaction changes in the time domain; a blue
light sensor protein PixD
Masahide Terazima
Rapid Communication in Photoscience, 4, 1, pp.1–8 (2015)
DOI : 10.5857/RCP.2015.4.1.1
Reaction dynamics of the UV-B photosensor UVR8
Takaaki Miyamori, Yusuke Nakasone, Kenichi Hitomi, John M. Christie, Elizabeth
D. Getzoffand, and Masahide Terazima
Photochem. Photobiol. Sci., 14, pp.995–1004 (2015)
DOI: 10.1039/C5PP00012B
時間分解熱力学量で見るタンパク質揺らぎと反応
寺嶋正秀
パリティ, vol.30, No.08, pp.52-55 (2015)
タンパク質反応と揺らぎ
黒井邦巧、寺嶋正秀
生物物理学会誌, 55, pp.235-241 (2015)
タンパク質の揺らぎが生体反応を決める
寺嶋正秀
現代化学,534, pp.42-46 (2015)