355. Similarities and Differences Between RNA and DNA Double-Helical Structures
in Circular Dichroism Spectroscopy: A SAC-CI Study
Miyahara, T.; Nakatsuji, H.; Sugiyama, H.
J. Phys. Chem. A 2016, 120, 9008-9018.
354. A Multi-Target Small Molecule for Targeted Transcriptional Activation of Therapeutically Significant Nervous System Genes
Wei, Y.; Pandian, G. N.; Zou, T.; Taniguchi, J.; Sato, S.; Kashiwazaki, G.; Vaijayanthi, T.; Hidaka, T.; Bando, T.; Sugiyama, H.
ChemistryOpen 2016, 5, 517-521.
353. Indentification of Binding Targets of a Pyrrole-Imidazole Polyamide
KR12 in the LS180 Colorectal Cancer Genome
Lin, J.; Hiraoka, K.; Watanabe, T.: Kuo, T.; Shinozuka, Y.: Takatori, A.;Koshikawa N.; Chandran, A.; Otsuki, J.; Sugiyama, H.; Horton, P.; Nagase, H.
PLOS ONE 2016, e0165581.
352. Torsional Constraints of DNA Substrates Impact Cas9 Cleavage
Räz, M.; Hidaka, K.; Sturla, S.; Sugiyama, H.; Endo, M.
J. Am. Chem. Soc. 2016, 138, 13842-13845.
351. Targeting 24 bp within Telomere Repeat Sequences with Tandem Tetramer Pyrrole-Imidazole Polyamide Probes
Kawamoto, Y.; Sasaki, A.; Chandran, A.; Hashiya, K.; Ide, S.; Bando, T.;
Maeshima, K.; Sugiyama, H.
J. Am. Chem. Soc. 2016, 138, 14100-14107.
350. RNA-DNA Triplex Formation by Long Noncoding RNAs
Li, Y.; Syed, J.; Sugiyama, H.
Cell. Chem. Biol. 2016, 23, 1325-1333.
349. Preferetial 5-Methylcytocine Oxidation in the Linker Region of Reconstituted
Positioned Nucleosome by Tet1 Protein
Kizaki, S.; Zou, T.; Li, Y.; Han, Y.-W.; Suzuki, Y.; Harada, Y.; Sugiyama,
H.
Chem. Eur. J. 2016, 22, 16598-16601.
348. Genome-Wide Assessment of the Binding Effects of Artificial Transcriptional Activators by Utilizing the Power of High-Throughput Sequencing
Chandran, A.; Syed, J.; Li, Y.; Sato, S.; Bando, T.; Sugiyama, H.
ChemBioChem. 2016, 17, 1905-1910.
347. A Small Molecule That Represses Translation of G-Quadruplex-Containing mRNA
Katsuda, Y.; Sato, S.; Asano, L.; Morimura, Y.; Furuta, T.; Sugiyama, H.;
Hagihara, M.; Uesugi, M.
J. Am. Chem. Soc., 2016, 138, 9037-9040.
346. Comparative Analysis of DNA-Binding Selectivity of Hairpin and Cyclic
Pyrrole-Imidazole Polyamides Based on Next-Generation Sequencing
Kashiwazaki, G.; Chandran, A.; Asamitsu, S.; Kawase, T.; Kawamoto, Y.;
Sawatani, Y.; Hashiya, K.; Bando, T.; Sugiyama, H.
ChemBioChem, 2016, 17, 1752-1758.
345. Mechanical Properties of DNA Origami Nanoassemblies are Determined
by Holliday Junction Mechanophores
Shrestha, P.; Emura, T.; Koirala, D.; Cui, Y.; Hidaka, K.; Maximuck, W.; Endo, M.; Sugiyama, H.; Mao, H.
Nucleic Acids Res. 2016, 44, 6574-6582.
344. Telomere Visualization in Tissue Sections using Pyrrole-Imidazole
Polyamide Probes
Sasaki, A.; Ide, S.; Kawamoto, Y.; Bando, T.; Murata, Y.; Shimura, M.; Yamada, K.; Hirata, A.; Nokihara, K.; Hirata, T.; Sugiyama, H.; Maeshima, K.
Sci. Rep. 2016, 6, 29261.
343. Sequence-Specific DNA Binding by Long Hairpin Pyrrole-Imidazole Polyamides
Containing an 8-Amino-3,6-Dioxaoctanoic Acid Unit
Sawatani, Y.; Kashiwazaki, G.; Chandran, A.; Asamitsu, S.; Guo, C.; Sato,
S.; Hashiya, K.; Bando, T.; Sugiyama, H.
Bioorg. Med. Chem. 2016, 24, 3603-3611.
342. Examining Cooperative Binding of Sox2 on DC5 Regulatory Element upon
Complex Formation with Pax6 through Excess Electron Transfer Assay
Saha, A.; Kizaki, S.; De D.; Endo, M.; Kim, K.; Sugiyama, H.
Nucleic Acids Res. 2016, 44, e125.
341. Ligand-Mediated G-Quadruplex Induction in a Double-Stranded DNA Context
by Cyclic Imidazole/Lysine Polyamide
Asamitsu, S.; Li, Y.; Bando, T.; Sugiyama, H.
ChemBioChem. 2016, 17, 1317-1322.
340. Double β-alanine Substitutions Incorporated in 12-ring Pyrrole-Imidazole
Polyamides for Lengthened DNA Minor Groove Recognition
Watanabe, T.; Shinohara, K.; Shinozaki, Y.; Uekusa, S.; Wang, X. F.; Koshikawa, N.; Hiraoka, K.; Inoue, T.; Lin, J.; Bando, T.; Sugiyama, H.; Nagase, H.
Adv Tech Biol Med. 2016, 4, 175.
339. Nucleosome Assembly Alters the Accessibility of the Antitumor Agent Duocarmycin B2 to Duplex DNA
Zou, T. T.; Kizaki, S.; Pandian, G. N.; Sugiyama, H.
Chem. Eur. J. 2016, 22, 8756-8758.
338. Deciphering the Genomic Targets of Alkylating Polyamide Conjugates
Using High-Throughput Sequencing
Chandran, A.; Syed, J.; Taylor, R. D.; Kashiwazaki, G.; Sato, S.; Hashiya, K.; Bando, T.; Sugiyama, H.
Nucleic Acids Res. 2016, 44, 4014-4024.
337. Nature-Inspired Design of Smart Biomaterials Using the Chemical Biology
of Nucleic Acids
Pandian, G. N.; Sugiyama, H.
Bull. Chem. Soc. J. 2016, 89, 843-868.
336. Effect of ATRX and G-Quadruplex Formation by the VNTR Sequence on
α-Globin Gene Expression
Li, Y.; Syed, J.; Suzuki, Y.; Asamitsu, S.; Shioda, N.; Wada, T.; Sugiyama, H.
ChemBioChem. 2016, 17, 928-935.
335. Triple Helix Formation in a Topologically Controlled DNA Nanosystem
Yamagata, Y.; Emura, T.; Hidaka, K.; Sugiyama, H.; Endo, Masayuki.
Chem. Eur. J. 2016, 22, 5494-5498.
334. Self-Assembling DNA Hydrogel-Based Delivery of Immunoinhibitory Nucleic
Acids to Immune Cells
Nishida, Y.; Ohtsuki, S.; Araie, Y.; Umeki, Y.; Endo, M.; Emura, T.; Hidaka,
K.; Sugiyama, H.; Takahashi, Y; Takakura, Y.; Nishikawa, M.
Nanomedicine. 2016, 12, 123-130.
333. The Application of Fluorescence-Conjugated Pyrrole/Imidazole Polyamides
in the Characterization of Protein-DNA Complex Formation
Han, Y, W.; Sugiyama, H.; Harada, Y.
Biomater. Sci. 2016, 4, 391-399.
332. Identification of Sequence Specificity of 5-Methylcytosine Oxidation
by Tet1 Protein with High-Throughput Sequencing
Kizaki, S.; Chandranan, A.; Sugiyama, H.
ChemBioChem. 2016, 17, 403-406.
331. A Light-Driven Three Dimensional Plasmonic Nanosystem that Translates
Molecular Motion into Reversible Chiroptical Function
Kuzyk, A.; Yang, Y, Y.; Duan, X, Y.; Stoll, S.; Govorov, A, O.; Sugiyama, H.; Endo, M.; Liu, N.
Nat. Commun. 2016, 7, 10591.
330. Single-molecule Observations of RNA-RNA Kissing Interactions in a DNA Nanostructure
Takeuchi, Y.; Endo, M.; Suzuki, Y.; Hidaka, K.; Durand, G.; Dausse, E.;
Toulme, J.-J.; Sugiyama, H.
Biomater. Sci. 2016, 4, 130-135.
